Due to the lapse in funding in the federal government, MaizeGDB will be available only for informational purposes by non-federal employees. Until further notice, the website and community database will not be updated or maintained, and MaizeGDB staff will be unable to respond to feedback or emails.

Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes


One month | Six months | One year | All time

New or updated genes since one month ago. The cutoff date is December 17th, 2018.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
2 days agohsp10 heat shock protein10: Sequence shows similarity to Arabidopsis HSP18.2
1.03
AC208204.3_FG006
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Variation: August 8th, 2017
Gene Model: January 14th, 2019
2 days agohex1 hexokinase1: electrophoretic mobility; null allele is known; cytosolic; monomeric
3.02 - 3.03
GRMZM2G104081
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Variation: February 15th, 2010
Gene Model: September 15th, 2013
2 days agohex2 hexokinase2: electrophoretic mobility; null allele is known; cytosolic; monomeric
6.04 - 6.05
GRMZM2G432801
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Variation: February 15th, 2010
Gene Model: September 15th, 2013
2 days agohex3 hexokinase3:
8.05
GRMZM2G058745
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Variation: February 15th, 2010
Gene Model: September 15th, 2013
2 days agohex4 hexokinase4:
 
GRMZM2G068913
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohex5 hexokinase5:
 
GRMZM5G856653
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohex6 hexokinase6:
 
GRMZM2G171373
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohex7 hexokinase7:
 
GRMZM2G051806
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohex8 hexokinase8:
 
GRMZM2G046686
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohex9 hexokinase9:
 
GRMZM2G467069
Aguilera-Alvarado, GP et al. 2019. BMC Plant Biology 19:27     Reference: January 15th, 2019
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
2 days agohsp22 heat shock protein22: mitochondrial protein
4.07
GRMZM2G007729
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Gene Model: October 18th, 2013
2 days agohsp8 heat shock protein8:
 
GRMZM2G080724
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Gene Model: January 14th, 2019
2 days agohsp9 heat shock protein9:
 
GRMZM2G046382
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Gene Model: January 14th, 2019
2 days agohsp11 heat shock protein11:
 
GRMZM2G306679
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Gene Model: January 14th, 2019
2 days agohsp12 heat shock protein12:
 
GRMZM2G158232
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 15th, 2019
Gene Model: January 14th, 2019
3 days agohsp17.2 heat shock protein17.2: seedling expressed heat shock protein; cDNA sequence similar to other plant 18 kDa heat shock proteins but distinct in maize
3.04
GRMZM2G422240
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 3rd, 2015
3 days agoles*-A467 lesion*-A467: recessive les* plants have late, large, necrotic lesions
 
   Johal, GS; Hulbert, SH; Briggs, SP. 1995. Disease lesion mimics of maize: A model for cell death in plants. Bioessays 17:685-692     Reference: September 1st, 2003
Variation: January 14th, 2019
3 days agoznf1 zinc finger protein1: glucose starved, root tip cDNA
9.03
GRMZM5G836222
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 14th, 2019
Gene Model: January 13th, 2019
3 days agocsu1118  :
9.07
GRMZM5G860976
Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 14th, 2019
3 days agocdj3 chaperone DNA J3: NCBI: putative dnaJ chaperone family protein
5.03
GRMZM2G134980
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Variation: March 24th, 2017
Gene Model: March 24th, 2017
3 days agohsp1 heat shock protein1: genomic clones, single copy (Southern blots), transcribed (Northern blots), transgenic (petunia) expression
8.01
   Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agohsp90 heat shock protein, 90 kDa: heat-induced; encoded protein interacts with HSP101
10.04
GRMZM5G833699
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 14th, 2019
Variation: September 1st, 2003
Gene Model: November 3rd, 2014
3 days agohsp26 heat shock protein26: was umc195; cDNA, single mRNA species induced by heat shock, in vitro HSP26 imported by isolated chloroplasts, cross-reacts with anti-pea-chloroplast-HSP21 antibodies
1.03
GRMZM2G149647
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: January 30th, 2015
Gene Model: January 30th, 2015
3 days agocsu43  : gene specific probe, partially sequenced cDNA to leaf mRNA
9.04
GRMZM2G152105
Baysdorfer, C. 1993. Personal communication to MaizeDB     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 14th, 2019
3 days agocdj1 chaperone DNA J homolog1: leaf cDNA csu63, deduced amino acid sequence nearly identical to chaperone DNA J, multiple copies
1.11
GRMZM2G134917
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: September 29th, 2012
Gene Model: July 27th, 2016
3 days agohsp18f heat shock protein18f: induction by heat shock is developmentally constitutive
3.02
   Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: July 18th, 2014
3 days agohsp70-4 heat shock protein70-4:
3.05
   Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Variation: January 2nd, 2013
3 days agocsu193  : single copy, novel leaf cDNA sequence
9.03
GRMZM2G019586
Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 14th, 2019
3 days agohsp6 heat shock protein6:
 
AC209784.3_FG007
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Gene Model: January 14th, 2019
3 days agohsp7 heat shock protein7:
 
GRMZM5G802801
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Gene Model: January 14th, 2019
3 days agohsp5 heat shock protein5:
9.06
GRMZM2G366532
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: September 1st, 2003
Gene Model: January 14th, 2019
3 days agoIDP1637  :
9.00
GRMZM5G811223
    Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agoc3h6 C3H-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
9.04
GRMZM2G086614
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agoIDP1669  : similar to Arabidopsis LRR receptor-like serine/threonine-protein kinase FEI 2
9.06
GRMZM2G479243
    Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agoIDP1681  : similar to protein arginine N-methyltransferase 7 of A. thaliana
9.03
GRMZM2G037624
    Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agoIDP1984  :
9.03
GRMZM2G171616
    Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agoIDP2142  : similar to alpha-1,4-galacturonosyltransferase of A. thaliana
9.06
GRMZM2G113506
    Variation: March 31st, 2005
Gene Model: January 14th, 2019
3 days agohsp4 heat shock protein4:
7.02
GRMZM2G069651
Qian, YX et al. 2019. Gene pp.doi: 10.1016/j.gene.2018.12.062     Reference: January 14th, 2019
Gene Product: January 14th, 2019
Gene Model: January 14th, 2019
4 days agomez2 enhancer of zeste2:
9.04
GRMZM5G875502
Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: September 1st, 2003
Variation: January 13th, 2019
Gene Model: January 13th, 2019
4 days agoIDP1969  : similar to ferredoxin 2 of A. thaliana
9.01
GRMZM2G013607
    Variation: March 31st, 2005
Gene Model: January 13th, 2019
5 days agoAY110782  :
9.04
GRMZM2G431243
    Variation: September 25th, 2007
Gene Model: January 12th, 2019
5 days agoIDP111  : imilar to Arabidopsis CP12 domain-containing protein 1
9.01
GRMZM2G480850
    Variation: March 31st, 2005
Gene Model: January 12th, 2019
6 days agoanx1 annexin1:
 
GRMZM2G064993
He, F et al. 2019. J Exp Bot pp.doi: 10.1093/jxb/ery452     Reference: January 11th, 2019
Variation: October 16th, 2013
Gene Model: July 27th, 2016
6 days agobbx7 b-box7:
 
GRMZM5G813532
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agobbx11 b-box11:
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
6 days agobbx12 b-box12:
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
6 days agobbx13 b-box13:
 
GRMZM2G438979
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agobbx17 b-box17:
 
GRMZM2G146614
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agobbx24 b-box24:
 
GRMZM2G354319
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agobbx26 b-box26:
 
GRMZM2G415711
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agobbx34 b-box34:
 
GRMZM2G056126
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
6 days agoanx2 annexin2:
5.07
GRMZM2G061950
He, F et al. 2019. J Exp Bot pp.doi: 10.1093/jxb/ery452     Reference: January 11th, 2019
Variation: October 15th, 2013
Gene Model: July 27th, 2016
6 days agobbx6 b-box6:
 
GRMZM2G422644
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: January 11th, 2019
Gene Model: January 10th, 2019
7 days agocol10 C2C2-CO-like-transcription factor 10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol13 C2C2-CO-like-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol14 C2C2-CO-like-transcription factor 14: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol2 C2C2-CO-like-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol3 C2C2-CO-like-transcription factor 3: Functions as a repressor of flowering
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol4 C2C2-CO-like-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol5 C2C2-CO-like-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol6 C2C2-CO-like-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol7 C2C2-CO-like-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol8 C2C2-CO-like-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol9 C2C2-CO-like-transcription factor 9: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
7 days agocol16 C2C2-CO-like-transcription factor 16:
1.06
GRMZM2G159996
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Variation: December 7th, 2016
Gene Model: December 7th, 2016
7 days agoprf5 Profilin homolog5: Deduced amino acid sequence shares 95% identity with PRF4 (aka ZmPRO4) and 79-80% identity with other maize profilins PRF1, PRF2 and PRF3.
9.02
GRMZM5G877388
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: September 1st, 2003
Variation: July 14th, 2008
Gene Model: January 15th, 2015
7 days agocol12 2C2-CO-like-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: zinc finger protein CONSTANS-LIKE 16
5.07
GRMZM2G041991
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: September 1st, 2003
Variation: March 31st, 2017
Gene Model: March 31st, 2017
7 days agocol11 C2C2-CO-like-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also
2.04
GRMZM2G095598
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Variation: October 9th, 2018
Gene Model: June 18th, 2018
7 days agodbb2 double B-box zinc finger protein2:
 
GRMZM2G131982
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb3 double B-box zinc finger protein3: similar to Arabidopsis light-regulated zinc finger protein 1
 
GRMZM5G834596
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb5 double B-box zinc finger protein5:
 
GRMZM2G118884
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb7 double B-box zinc finger protein7:
 
GRMZM2G110541
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb8 double B-box zinc finger protein8:
 
GRMZM2G070446
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb9 double B-box zinc finger protein9:
 
GRMZM2G116475
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb10 double B-box zinc finger protein10:
 
GRMZM2G143718
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb11 double B-box zinc finger protein11:
 
GRMZM2G028594
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agodbb12 double B-box zinc finger protein12:
 
GRMZM2G098442
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
7 days agocol17 C2C2-CO-like-transcription factor 17:
 
GRMZM2G176173
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Gene Model: June 16th, 2018
7 days agocol19 C2C2-CO-like-transcription factor 19:
 
GRMZM2G092363
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Gene Model: June 16th, 2018
7 days agocol15 C2C2-CO-like-transcription factor 1:
1.04
GRMZM2G134671
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Gene Model: June 16th, 2018
7 days agodbb4 double B-box zinc finger protein4:
4.05
GRMZM2G019335
Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
7 days agoconz1 constans1: homologous to photoperiod genes constans (co) from Arabiodopsis and heading date 1 (hd1) in rice. (Miller 2008)
9.03
   Shalmani, A et al. 2019. BMC Genomics 20:27     Reference: January 10th, 2019
Gene Product: June 18th, 2018
Variation: July 28th, 2008
8 days agofae2 fatty acid elongase2:
9.03
   Schreiber, L et al. 2000. Biochem Soc Trans 28:647-649     Reference: May 29th, 2010
Variation: January 9th, 2019
8 days agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
   Boehlein, SK et al. 2018. Frontiers Plant Sci pp.doi: 10.3389/fpls.2018.01849     Reference: January 9th, 2019
Gene Product: November 4th, 2014
Variation: December 4th, 2018
8 days agogl3 glossy3: like gl1, but surface wax has all rice-grain-type particles
4.08
GRMZM2G162434
Rallapalli, G et al. 2019. BMC Bioinformatics 20:9     Reference: January 9th, 2019
Gene Product: June 2nd, 2012
Variation: June 2nd, 2012
Gene Model: June 2nd, 2012
8 days agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
   Boehlein, SK et al. 2018. Frontiers Plant Sci pp.doi: 10.3389/fpls.2018.01849     Reference: January 9th, 2019
Gene Product: November 4th, 2014
Variation: January 9th, 2019
8 days agophp20075b(ext)  : similar to Arabidopsis putative gibberellin-regulated protein
9.03
GRMZM2G105364
Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Variation: September 1st, 2003
Gene Model: January 9th, 2019
8 days agoglpdh1 glycerol-3-phosphate dehydrogenase1: NAD+-dependent type A
 
GRMZM2G155348
Zhao, Y et al. 2019. BMC Plant Biology 19:16     Reference: January 9th, 2019
Gene Product: July 12th, 2018
Gene Model: July 11th, 2018
9 days agomac1 multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications!
10.03
GRMZM2G027522
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: August 2nd, 2012
Variation: August 10th, 2012
Gene Model: July 26th, 2012
Recommended by Chung-Ju Rachel Wang:
December 19th, 2013
9 days agoms*-6015  :
 
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Variation: August 8th, 2014
9 days agoam1 ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)affects switch to meiotic cell cycle
5.02
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Variation: August 11th, 2011
9 days agoms13 male sterile13: like ms5; affected at microspore vacuolation
5.00 - 5.01
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Variation: May 27th, 2004
9 days agoms22 male sterile22: pollen mother cells degenerate
7.02
GRMZM2G442791
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: August 12th, 2012
Variation: February 12th, 2013
Gene Model: August 11th, 2012
9 days agoms23 male sterile23: pollen mother cells degenerate
8.01 - 8.02
GRMZM2G021276
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: September 14th, 2016
Variation: December 4th, 2016
Gene Model: December 4th, 2016
9 days agoms9 male sterile9: breakdown of pollen mother cellsLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.03
GRMZM2G006981
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: September 1st, 2003
Variation: July 18th, 2015
Gene Model: July 16th, 2015
9 days agoes4 embryo sac4: one of 4-5 copy gene family; pre-zygotic, embryo sac specific; required for pollen tube growth arrest and burst
 
GRMZM2G128301
Zhou, LZ; Dresselhaus, T. 2019. Current Topics in Developmental Biology 131:453-496     Reference: January 8th, 2019
Gene Product: April 22nd, 2011
Variation: April 25th, 2011
Gene Model: April 22nd, 2011
9 days agoes1 embryo sac1: one of 4-5 copy gene family; pre-zygotic embryo sac specific; required for pollen tube growth arrest and burst
 
GRMZM2G012012
Zhou, LZ; Dresselhaus, T. 2019. Current Topics in Developmental Biology 131:453-496     Reference: January 8th, 2019
Gene Product: April 22nd, 2011
Variation: April 25th, 2011
Gene Model: April 22nd, 2011
9 days agoes2 embryo sac2: one of 4-5 copy gene family; pre-zygotic embryo sac specific; required for pollen tube growth arrest and burst
 
GRMZM2G128301
Zhou, LZ; Dresselhaus, T. 2019. Current Topics in Developmental Biology 131:453-496     Reference: January 8th, 2019
Gene Product: April 22nd, 2011
Gene Model: April 22nd, 2011
9 days agoes3 embryo sac3: one of 4-5 copy gene family; pre-zygotic embyro sac specific; required for pollen tube growth arrest and burst
 
GRMZM2G128301
Zhou, LZ; Dresselhaus, T. 2019. Current Topics in Developmental Biology 131:453-496     Reference: January 8th, 2019
Gene Product: April 22nd, 2011
Gene Model: April 22nd, 2011
9 days agoms32 male sterile32: like ms1
2.00 - 2.10
GRMZM2G163233
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: September 2nd, 2013
Variation: December 4th, 2016
Gene Model: September 2nd, 2013
9 days agoocl4 outer cell layer4:
1.05 - 1.06
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: September 1st, 2003
Variation: February 23rd, 2013
9 days agosut1 sucrose transporter1: mutant plants are deficient in leaf sucrose unloading to pholem; mature leaves hyperaccumulate carbohydrates and display leaf chlorosis with premature senescence
1.02
GRMZM2G034302
Sosso, D et al. 2018. Plant Physiol. doi: 10.1104/pp.18.01435     Reference: January 8th, 2019
Gene Product: September 14th, 2013
Variation: April 16th, 2013
Gene Model: April 16th, 2013
9 days agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
GRMZM2G137954
Sosso, D et al. 2018. Plant Physiol. doi: 10.1104/pp.18.01435   LOC_Os02g19820 (MSU/TIGR) Reference: January 8th, 2019
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
9 days agosweet4b sugars will eventually be exported transporter4b:
5.04
GRMZM2G144581
Sosso, D et al. 2018. Plant Physiol. doi: 10.1104/pp.18.01435     Reference: January 8th, 2019
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
9 days agopmei3 pectin methylesterase inhibitor3:
6.05
   Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Variation: September 25th, 2007
9 days agosweet11a sugars will eventually be exported transporter11:
1.06
GRMZM2G368827
Sosso, D et al. 2018. Plant Physiol. doi: 10.1104/pp.18.01435     Reference: January 8th, 2019
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
9 days agotcl1 tapetal cell layer1: Mutant fails to form coherent middle and tapetal layers, and there are extra cells between the endothecial and inner sporogenous (AR) cells.
 
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Variation: February 12th, 2013
9 days agosweet4a sugars will eventually be exported transporter4a:
 
GRMZM2G000812
Sosso, D et al. 2018. Plant Physiol. doi: 10.1104/pp.18.01435     Reference: January 8th, 2019
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
9 days agomsp1 multiple sporocyte1: A conserved ligand-receptor pair with mac1
 
GRMZM2G447447
van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256   AT5G07280 (TAIR)
LOC_Os01g68870 (MSU/TIGR)
Reference: January 8th, 2019
Gene Product: February 17th, 2018
Gene Model: February 17th, 2018
9 days agopmei2 pectin methylesterase inhibitor2:
 
GRMZM2G122230
Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Gene Model: January 8th, 2019
9 days agopmei4 pectin methylesterase inhibitor4:
 
GRMZM2G457612
Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Gene Model: January 8th, 2019
9 days agopmei5 pectin methylesterase inhibitor5:
 
GRMZM5G888934
Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Gene Model: January 8th, 2019
9 days agopmei6 pectin methylesterase inhibitor6:
 
GRMZM2G343236
Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Gene Model: January 8th, 2019
9 days agopmei1 pectin methylesterase inhibitor1:
6.07
GRMZM2G079661
Woriedh, M et al. 2013. Plant Reproduction 26:255-266     Reference: January 8th, 2019
Gene Product: January 8th, 2019
Gene Model: January 8th, 2019
13 days agortl3 reversion-to-ethylene sensitivity1 like3: Over-expression reduces ethylene responses (Shi et al. 2016)
 
GRMZM2G121208
Zheng, LJ et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-018-1524-4     Reference: January 4th, 2019
Variation: June 10th, 2016
Gene Model: June 10th, 2016
13 days agoexpb14 beta expansin14: may be involved in seed expansion during kernel development
 
GRMZM2G118873
Zheng, LJ et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-018-1524-4     Reference: January 4th, 2019
Gene Product: April 24th, 2008
Gene Model: January 4th, 2019
13 days agoexpb15 beta expansin15: may be involved in seed expansion during kernel development
 
GRMZM2G121308
Zheng, LJ et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-018-1524-4     Reference: January 4th, 2019
Gene Product: April 24th, 2008
Gene Model: January 4th, 2019
15 days agoaasr1 abscisic acid stress ripening1: protects the major ARS protein in maize; protects kernel yield under water deficit; SSR pio059, IDP9044
10.02
GRMZM2G136910
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Variation: December 30th, 2011
Gene Model: November 1st, 2011
15 days agoaasr2 abscisic acid stress ripening2:
2.05
GRMZM5G854138
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: December 1st, 2011
Variation: November 22nd, 2011
Gene Model: November 1st, 2011
15 days agoaasr6 abscisic acid stress ripening6:
5.04
GRMZM2G057841
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Variation: November 12th, 2014
Gene Model: November 1st, 2011
15 days agoaasr9 abscisic acid stress ripening9:
3.04
GRMZM2G383699
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Gene Model: November 1st, 2011
15 days agobss1 bundle sheath strands specific1: encodes a photosynthesis-related protein with a deduced amino acid sequence with high homology to tomato Asr1 in the C-terminal region; stress-inducilible;
8.06
GRMZM2G168552
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: December 1st, 2011
Variation: November 1st, 2011
Gene Model: November 1st, 2011
15 days agoaasr3 abscisic acid stress ripening3:
2.04
GRMZM5G806182
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: December 1st, 2011
Gene Model: January 2nd, 2019
15 days agoaasr5 abscisic acid stress ripening5:
10.04
GRMZM2G052100
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: November 4th, 2011
Variation: April 14th, 2007
Gene Model: November 1st, 2011
15 days agoaasr7 abscisic acid stress ripening7:
 
GRMZM2G014797
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Gene Model: November 1st, 2011
15 days agoaasr8 abscisic acid stress ripening8:
 
GRMZM2G314075
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Gene Model: November 1st, 2011
15 days agoaasr10 abscisic acid stress ripening10:
 
GRMZM2G009792
Zhang, J et al. 2019. Int J Mol Sci 20:133     Reference: January 2nd, 2019
Gene Product: January 2nd, 2019
Gene Model: January 2nd, 2019
17 days agoakin2 AKINbetagamma-1 protein kinase2:
1.03
   Wang, J et al. 2018. Gene doi: 10.1016/j.gene.2018.     Reference: December 31st, 2018
Gene Product: December 31st, 2018
Variation: September 25th, 2007
17 days agosnrk1a2 SNF1-related kinase alpha1-like2:
 
GRMZM2G180704
Wang, J et al. 2018. Gene doi: 10.1016/j.gene.2018.     Reference: December 31st, 2018
Gene Product: December 31st, 2018
Gene Model: February 13th, 2014
17 days agosnrk1a1 SNF1-related kinase alpha1-like1:
6.06
GRMZM2G105401
Wang, J et al. 2018. Gene doi: 10.1016/j.gene.2018.     Reference: December 31st, 2018
Gene Product: December 31st, 2018
Gene Model: February 7th, 2018
20 days agospi1 sparse inflorescence1: mutant tassels have fewer branches and spikelets, and its ears are small, with fewer kernels
3.08
GRMZM2G025222
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: June 18th, 2018
Variation: June 24th, 2011
Gene Model: April 24th, 2013
Recommended by Lisa Harper:
October 7th, 2008
20 days agoabp1 auxin binding protein1: putative auxin receptor, single band in Southerns, endoplasmic reticulum and plasma membrane locales (aka axr1, aux311)Dominant Scmv1 and Scmv2 confer resistance
3.05 - 3.05
   Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: September 1st, 2003
Variation: August 23rd, 2017
20 days agopin12 PIN-formed protein12: similar to Arabidopsis PIN10 (Forestan et al 2012)
9.02
GRMZM2G160496
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agopin9 PIN-formed protein9: similar to Arabidopsis PIN9 (Forestan et al 2012)
3.06
GRMZM5G859099
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agoba1 barren stalk1: ear shoots and most tassel branches and spikelets absent
3.06
   Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: July 19th, 2012
Variation: March 18th, 2015
20 days agobif1 barren inflorescence1: dominant Bif1 plants have ear and tassel with many fewer spikelets, bare rachis appendages
8.03 - 8.03
GRMZM2G130953
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: October 16th, 2015
Variation: October 16th, 2015
Gene Model: October 16th, 2015
20 days agobr2 brachytic2: like br1; mi1 is allelic and preceded (1935), but br2 name is retained due to long usagelike Arabidopsis ABC transporter B family member 1
1.06 - 1.07
GRMZM2G315375
Yue, R et al. 2015. PLoS One 10:e0118751     Reference: December 28th, 2018
Gene Product: May 1st, 2012
Variation: June 22nd, 2018
Gene Model: April 28th, 2012
20 days agobif4 barren inflorescence4: like Bif1; dominant plants have ear and tassel with many fewer spikelets, bare rachis appendage
 
   Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: October 16th, 2015
Variation: October 16th, 2015
20 days agoaic1 auxin import carrier1: cDNA encoding a protein with a deduced amino acid showing 73% identity to AtAUX1.
1.05
GRMZM2G129413
Yue, R et al. 2015. PLoS One 10:e0118751   AT2G21050 (TAIR) Reference: December 28th, 2018
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 21st, 2015
20 days agobif2 barren inflorescence2: recessive few-branched tassel, normally no pollen shed; variable expression on ear with 0-2 spikelets produced at each floral node
1.05
   Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012   AT2G34650 (TAIR) Reference: December 28th, 2018
Gene Product: July 19th, 2012
Variation: October 23rd, 2013
20 days agotar1 tryptophan aminotransferase related1:
6.05
GRMZM2G127160
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 30th, 2011
Gene Model: June 4th, 2012
20 days agoabp4 auxin binding protein homolog4: putative auxin receptor, genomic clone, promoter-reporter gene fusion functional in maize leaf protoplasts. cDNA ZmERabp4 probes one band on Southerns
10.03
   Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: September 1st, 2003
Variation: May 26th, 2005
20 days agoaic3 auxin import carrier3: part of gene family that maintains auxin distribution pattern against environmental or developmental influences
1.03
GRMZM2G149481
Yue, R et al. 2015. PLoS One 10:e0118751     Reference: December 28th, 2018
Gene Product: April 19th, 2017
Gene Model: April 19th, 2017
20 days agorum1 rootless with undetectable meristems1: primordia for seminal roots and for laterals on the primary root absent
 
GRMZM2G037368
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: June 16th, 2014
Variation: June 16th, 2014
Gene Model: June 16th, 2014
20 days agode18 defective18: Defective kernel: seed weight less than half of normal (B37) (Torti et al. 1984)
10.03
GRMZM2G091819
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: June 18th, 2018
Variation: January 21st, 2016
Gene Model: September 11th, 2012
20 days agovt2 vanishing tassel2: inflorescence development; TRP-depenedent auxin synthesis
 
GRMZM2G127308
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012   AT1G70560 (TAIR) Reference: December 28th, 2018
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
20 days agopin5 PIN-formed protein5: similar to Arabiodopsis PIN5 (Forestan et al 2012)
 
GRMZM2G025742
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agopin7 PIN-formed protein7: simlar to Arabiodopsis PIN5 (Forestan et al 2012)
 
GRMZM2G148648
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agopin11 PIN-formed protein11: similar to Arabiodopsis PIN5 (Forestan et al 2012)
 
GRMZM2G040911
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agopin10 PIN-formed protein10: similar to Arabidopsis PIN10 (Forestan et al 2012)
 
GRMZM2G126260
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agopin4 PIN-formed protein4: auxin efflux carriter similar to Arabidopsis PIN1 (Forestan et al 2012), but from PIN clade not found in all flowering plants save for the Brassicacease (O'Connor 2014 et al
4.08
GRMZM2G171702
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agoatl1 auxin transporter-like1: mutant tassels have reduced branch numbers; bald tip on ears with fewer spikelets per row, and agravitropic root growth
 
GRMZM2G127949
Yue, R et al. 2015. PLoS One 10:e0118751   AT2G38120 (TAIR)
LOC_Os01g63770 (MSU/TIGR)
Reference: December 28th, 2018
Gene Product: April 19th, 2017
Variation: April 19th, 2017
Gene Model: March 12th, 2015
20 days agoaic2 auxin import carrier2:
 
GRMZM2G045057
Yue, R et al. 2015. PLoS One 10:e0118751   AT2G21050 (TAIR) Reference: December 28th, 2018
Gene Product: September 1st, 2003
Variation: August 1st, 2017
Gene Model: August 1st, 2017
20 days agoyuc7 yucca7:
 
GRMZM2G480386
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: June 18th, 2018
Gene Model: August 19th, 2017
20 days agotar2 tryptophan aminotransferase related2:
 
GRMZM2G066345
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 30th, 2011
Gene Model: August 19th, 2017
20 days agoaic4 auxin import carrier4: part of gene family that maintains auxin distribution pattern against environmental or developmental influences
 
GRMZM2G067022
Yue, R et al. 2015. PLoS One 10:e0118751     Reference: December 28th, 2018
Gene Product: April 19th, 2017
Gene Model: December 28th, 2018
20 days agotir1 transport inhibitor response1: encodes a member of a class of F-BOX proteins shown to bind auxin and facilitate degradation of the transcriptional repressor Aux/IAA proteins
 
GRMZM2G135978
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012   LOC_Os05g05800 (MSU/TIGR)
Os05g0150500 (Gramene)
Reference: December 28th, 2018
Gene Product: July 25th, 2017
Gene Model: December 28th, 2018
20 days agopin2 PIN-formed protein2: see pin1
5.06
GRMZM2G074267
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Variation: June 11th, 2007
Gene Model: June 7th, 2012
20 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
GRMZM2G098643
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: January 24th, 2013
20 days agopin8 PIN-formed protein8: similar to Arabidopsis PIN8 (Forestan et al 2012)
3.07
GRMZM5G839411
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
20 days agotar3 tryptophan aminotransferase related3:
6.05
GRMZM2G141810
Matthes, MS et al. 2018. Mol Plant. doi: 10.1016/j.molp.2018.12.012     Reference: December 28th, 2018
Gene Product: April 30th, 2011
Gene Model: August 22nd, 2013
23 days agons2 narrow sheath2: embryonic transcription factor; duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: August 25th, 2017
Variation: June 29th, 2005
23 days agolgn1 liguleless narrow1: Mutant leaves are narrow and branching in the inflorescence is reduced.
 
GRMZM2G134382
Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: January 24th, 2013
Variation: January 15th, 2016
Gene Model: January 3rd, 2013
23 days agohsf1 hairy sheath frayed1: dominant Hsf1 plants have pubescent sheaths and leaf margins; liguled enations at leaf margins
5.06 - 5.07
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Variation: September 1st, 2003
23 days agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Variation: December 6th, 2013
23 days agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: December 18th, 2014
Variation: November 8th, 2007
23 days agolg2 liguleless2: like lg1, less extreme
3.06
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: August 22nd, 2014
Variation: August 20th, 2014
23 days agolg3 liguleless3: dominant Lg3 plants lack ligule; leaves upright, broad, often concave and pleated; homeobox similar to knox5 and knox11
3.04
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: August 22nd, 2014
Variation: March 16th, 2015
23 days agolg4 liguleless4: dominant Lg4 plants lack ligule and auricle but show vestiges sporadically in bladeclass I homeobox; cDNA and genomic clones; sequence and expression similar to lg3 and knox5
8.05
GRMZM2G094241
Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: August 22nd, 2014
Variation: May 18th, 2012
Gene Model: May 24th, 2012
23 days agora2 ramosa2: tassel many-branched, upright, not conical like ra1; irregular kernel placement
3.03 - 3.03
AC233943.1_FG002
Richardson, AE; Hake, S. 2018. Plants 8: 4   AT5G63090 (TAIR)
LOC_Os01g07480 (MSU/TIGR)
Os01g0169400 (Gramene)
Reference: December 25th, 2018
Gene Product: July 27th, 2009
Variation: September 19th, 2009
Gene Model: July 14th, 2011
23 days agotru1 tassels replace upper ears1: upper ear branches tassel-like, tillers bear ears
3.04 - 3.10
GRMZM2G039867
Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: December 17th, 2013
Variation: December 18th, 2013
Gene Model: December 17th, 2013
23 days agowab1 Wavy auricles in blades1: dominant confers auricle tissue in blade portion of leafrecessive mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants
2.06 - 2.07
GRMZM2G110242
Richardson, AE; Hake, S. 2018. Plants 8: 4   LOC_Os09g24480 (MSU/TIGR)
Os09g0410500 (Gramene)
Reference: December 25th, 2018
Gene Product: September 14th, 2016
Variation: November 2nd, 2014
Gene Model: November 2nd, 2014
23 days agohb48 Homeobox-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Variation: April 7th, 2017
23 days agohb76 Homeobox-transcription factor 76: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Variation: April 7th, 2017
23 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: August 25th, 2017
Variation: February 20th, 2015
23 days agogn1 gnarley1: dominant Gn1 characterized by reduced internodal length, sinuously curving culm, lack of distinct boundary between blade and sheath, extra silks
2.10
   Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: September 1st, 2003
Variation: May 30th, 2014
23 days agobrd1 brassinosteroid-deficient dwarf1: Mutant plants have essentially no internode elongation and exhibit no etiolation response when germinated in the dark.
 
GRMZM2G103773
Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Gene Product: February 18th, 2012
Variation: March 5th, 2012
Gene Model: February 15th, 2012
23 days agobri1a brassinosteroid insensitive1a: Encodes a brassinosteroid receptor
 
GRMZM2G048294
Richardson, AE; Hake, S. 2018. Plants 8: 4   AT4G39400 (TAIR)
LOC_Os01g52050 (MSU/TIGR)
Reference: December 25th, 2018
Variation: July 17th, 2015
Gene Model: July 16th, 2015
23 days agobri1b brassinosteroid insensitive1b: Encodes a brassinosteroid receptor
 
GRMZM2G449830
Richardson, AE; Hake, S. 2018. Plants 8: 4     Reference: December 25th, 2018
Variation: July 17th, 2015
Gene Model: July 16th, 2015
24 days agosep1 selenoprotein1: NCBI: selenoprotein family proteincontributes to tolerance of both osmotic and salinity stress
3.05 - 3.06
GRMZM2G109429
Zhu, JT et al. 2018. Plant Cell Environ pp.doi: 10.1111/pce.13507     Reference: December 24th, 2018
Gene Product: December 24th, 2018
Variation: December 24th, 2018
Gene Model: March 3rd, 2017
24 days agouggt1 UDP-glucose:glycoprotein glucosyltransferase1: protein product interacts with sep1 product;
 
GRMZM5G846198
Zhu, JT et al. 2018. Plant Cell Environ pp.doi: 10.1111/pce.13507     Reference: December 24th, 2018
Gene Product: December 24th, 2018
Gene Model: December 24th, 2018
26 days agocyc13 cyclin13:
4.07
GRMZM2G075117
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Variation: March 15th, 2017
Gene Model: March 15th, 2017
26 days agocki1 cyclin-dependent kinase inhibitor1:
1.08
GRMZM2G116885
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Variation: December 6th, 2016
Gene Model: December 6th, 2016
26 days agocyc14 cyclin14: NCBI: cyclin-D4-2-like
1.07
GRMZM2G133413
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Variation: January 19th, 2017
Gene Model: January 19th, 2017
26 days agocdc2 cell division control protein homolog2: cDNA sequence homologous to cdc2/cdc28 subfamily of serine/threonine protein kinases, complements yeast cdc28
1.01
GRMZM2G008327
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: December 29th, 2016
Variation: April 23rd, 2010
Gene Model: March 30th, 2015
26 days agocdc3 cell division control protein homolog3:
3.10
GRMZM2G495626
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: December 29th, 2016
Gene Model: December 21st, 2018
26 days agocki6 cyclin-dependent kinase inhibitor6:
4.07
GRMZM2G084570
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
26 days agocyc10 cyclin10: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
GRMZM2G107377
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Variation: December 21st, 2016
Gene Model: December 21st, 2016
26 days agocyc11 cyclin11: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
GRMZM2G161382
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Gene Model: December 21st, 2016
26 days agocki2 cyclin-dependent kinase inhibitor2:
 
GRMZM2G037926
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Variation: May 17th, 2017
Gene Model: March 7th, 2017
26 days agocki3 cyclin-dependent kinase inhibitor3:
 
GRMZM2G157510
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Variation: May 4th, 2017
Gene Model: March 7th, 2017
26 days agocki4 cyclin-dependent kinase inhibitor4:
 
GRMZM2G358931
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Variation: May 26th, 2017
Gene Model: March 7th, 2017
26 days agocki7 cyclin-dependent kinase inhibitor7:
 
GRMZM2G343769
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
26 days agocki8 cyclin-dependent kinase inhibitor8:
 
GRMZM2G154414
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
26 days agocyc15 cyclin15:
 
GRMZM2G006721
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Gene Model: December 21st, 2018
26 days agocyc16 cyclin16:
 
GRMZM2G007130
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: June 26th, 2009
Gene Model: December 21st, 2018
26 days agocki5 cyclin-dependent kinase inhibitor5:
5.07
GRMZM2G101613
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
26 days agocdc1 cell division control protein homolog1:
4.10
GRMZM2G174596
Garza-Aguilar, SM et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.12.020     Reference: December 22nd, 2018
Gene Product: December 29th, 2016
Gene Model: December 21st, 2018
27 days agoppr27 pentatricopeptide repeat protein27:
 
GRMZM2G353195
Chen, L et al. 2018. BMC Plant Biology 18:366     Reference: December 21st, 2018
Gene Product: December 27th, 2016
Gene Model: December 21st, 2018
27 days agoppr360 pentatricopeptide repeat protein360:
 
GRMZM2G141202
Chen, L et al. 2018. BMC Plant Biology 18:366     Reference: December 21st, 2018
Gene Product: December 27th, 2016
Gene Model: December 21st, 2018
29 days agoufo1 unstable factor for orange1: dominant Ufo1 plants have orange color in anthers, silks, and most other plant parts in presence of P1-wr or P1-rr; growth retarded
10.03
GRMZM2G053177
Wittmeyer, KT et al. 2018. Plant Cell pp.doi: 10.1105/tpc.18.00546     Reference: December 19th, 2018
Variation: December 19th, 2018
Gene Model: December 19th, 2018

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